{"dcterms:modified":"2021-10-20","dcterms:creator":"A Dataverse Instance","@type":"ore:ResourceMap","@id":"http://opendata.cqjj8.com/api/datasets/export?exporter=OAI_ORE&persistentId=doi:10.18170/DVN/XPECRU","ore:describes":{"citation_zh:联系人":{"datasetContact_zh:名称":"孔雷","datasetContact_zh:所在机构":"亚洲成人在线一二三四五六区生物信息学中心","datasetContact_zh:电子邮件":"kongl@mail.cbi.cqjj8.com"},"citation:Author":{"author:Name":"Center for Bioinformatics","author:Affiliation":"Peking University"},"citation_zh:作者":{"author_zh:名称":"生物信息学中心","author_zh:所在机构":"亚洲成人在线一二三四五六区"},"citation:Keyword":{"keyword:Term":"Composition Vector; phylogenetic study platform; whole genomes;"},"citation_zh:描述":{"dsDescription_zh:文本":"<a href=\"http://tlife.fudan.edu.cn/cvtree/\">访问数据</a><br>\r\nCVTree constructs whole-genome based phylogenetic trees without sequence alignment by using a Composition Vector (CV) approach. It was first developed to infer evolutionary relatedness of microbial organisms and then successfully applied to viruses, chloroplasts, and fungi. It circumvents the ambiguity of choosing the genes for phylogenetic reconstruction and avoids the necessity of aligning sequences of essentially different length and gene content.\r\n\r\nThe new features of this CVTree update include:\r\n\r\n\tthe inbuilt database has been enlarged and is now updated monthly from the NCBI FTP site Sayers et al. (2009).\r\n\tUsers may upload sequences of their own and carry out phylogenetic study together with genomes selected from the inbuilt database.\r\n\tMany kinds of tree files are provided to facilitate comparison with taxonomy. Some tree files are directly uploadable to MEGA Tamura et al. (2007) or the Interactive Tree Of Life (iTOL) project Letunic and Bork (2007) in order to display the results in different ways.\r\n\tThe efficiency of CVTree has been significantly enhanced to meet the requirement of treating thousands of genomes in a single run.\r\n"},"citation_zh:关键词":{"keyword_zh:词项":"Composition Vector; phylogenetic study platform; whole genomes;"},"citation:Description":{"dsDescription:Text":"<a href=\"http://tlife.fudan.edu.cn/cvtree/\">Access to Data</a><br>\r\nCVTree constructs whole-genome based phylogenetic trees without sequence alignment by using a Composition Vector (CV) approach. It was first developed to infer evolutionary relatedness of microbial organisms and then successfully applied to viruses, chloroplasts, and fungi. It circumvents the ambiguity of choosing the genes for phylogenetic reconstruction and avoids the necessity of aligning sequences of essentially different length and gene content.\r\n\r\nThe new features of this CVTree update include:\r\n\r\n\tthe inbuilt database has been enlarged and is now updated monthly from the NCBI FTP site Sayers et al. (2009).\r\n\tUsers may upload sequences of their own and carry out phylogenetic study together with genomes selected from the inbuilt database.\r\n\tMany kinds of tree files are provided to facilitate comparison with taxonomy. Some tree files are directly uploadable to MEGA Tamura et al. (2007) or the Interactive Tree Of Life (iTOL) project Letunic and Bork (2007) in order to display the results in different ways.\r\n\tThe efficiency of CVTree has been significantly enhanced to meet the requirement of treating thousands of genomes in a single run.\r\n"},"citation:Contact":{"datasetContact:Name":"Lei Kong","datasetContact:Affiliation":"Center for Bioinformatics , Peking University","datasetContact:E-mail":"kongl@mail.cbi.cqjj8.com"},"citation:Subject":"Medicine, Health and Life Sciences","citation_zh:标题":"CVTree - 组成矢量树构建系统发育树","citation:Depositor":"Peking University Library","citation_zh:提交者":"亚洲成人在线一二三四五六区图书馆","citation:Title":"CVTree -- Composition Vector Tree constructs phylogeny trees","citation_zh:学科":"医药、健康与生命科学","citation:Deposit Date":"2015-11-20","citation:Notes":"Please Cite:\r\nZhao Xu, Bailin Hao, \"CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes\", Nucleic Acids Res. 2009 37(Web Server issue): W174-W178.\r\n","citation_zh:备注":"Please Cite:\r\nZhao Xu, Bailin Hao, \"CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes\", Nucleic Acids Res. 2009 37(Web Server issue): W174-W178.\r\n","citation_zh:提交日期":"2015-11-20","@id":"doi:10.18170/DVN/XPECRU","@type":["ore:Aggregation","schema:Dataset"],"schema:version":"1.0","schema:datePublished":"2015-11-20","schema:name":"CVTree -- Composition Vector Tree constructs phylogeny trees","schema:dateModified":"Fri Nov 20 17:01:19 CST 2015","schema:license":"http://creativecommons.org/publicdomain/zero/1.0/","dvcore:fileTermsOfAccess":{"dvcore:fileRequestAccess":false},"schema:includedInDataCatalog":"Center for Bioinformatics, Peking University","ore:aggregates":[],"schema:hasPart":[]},"@context":{"author":"http://opendata.cqjj8.com/schema/citation/author#","author_zh":"http://opendata.cqjj8.com/schema/citation_zh/author_zh#","citation":"http://opendata.cqjj8.com/schema/citation#","citation_zh":"http://opendata.cqjj8.com/schema/citation_zh#","datasetContact":"http://opendata.cqjj8.com/schema/citation/datasetContact#","datasetContact_zh":"http://opendata.cqjj8.com/schema/citation_zh/datasetContact_zh#","dcterms":"http://purl.org/dc/terms/","dsDescription":"http://opendata.cqjj8.com/schema/citation/dsDescription#","dsDescription_zh":"http://opendata.cqjj8.com/schema/citation_zh/dsDescription_zh#","dvcore":"http://dataverse.org/schema/core#","keyword":"http://opendata.cqjj8.com/schema/citation/keyword#","keyword_zh":"http://opendata.cqjj8.com/schema/citation_zh/keyword_zh#","ore":"http://www.openarchives.org/ore/terms/","schema":"http://schema.org/"}}