{"id":124,"identifier":"DVN/XPECRU","persistentUrl":"http://doi.org/10.18170/DVN/XPECRU","protocol":"doi","authority":"10.18170","publisher":"Peking University Open Research Data Platform","publicationDate":"2015-11-20","storageIdentifier":"file://10.18170/DVN/XPECRU","datasetVersion":{"id":51,"storageIdentifier":"file://10.18170/DVN/XPECRU","versionNumber":1,"versionMinorNumber":0,"versionState":"RELEASED","productionDate":"Production Date","lastUpdateTime":"2015-11-20T09:01:19Z","releaseTime":"2015-11-20T09:01:19Z","createTime":"2015-11-20T09:01:03Z","license":"CC0","termsOfUse":"CC0 Waiver","fileAccessRequest":false,"metadataBlocks":{"citation_zh":{"displayName":"引用元数据","fields":[{"typeName":"title_zh","multiple":false,"typeClass":"primitive","value":"CVTree - 组成矢量树构建系统发育树"},{"typeName":"author_zh","multiple":true,"typeClass":"compound","value":[{"authorName_zh":{"typeName":"authorName_zh","multiple":false,"typeClass":"primitive","value":"生物信息学中心"},"authorAffiliation_zh":{"typeName":"authorAffiliation_zh","multiple":false,"typeClass":"primitive","value":"亚洲成人在线一二三四五六区"}}]},{"typeName":"datasetContact_zh","multiple":true,"typeClass":"compound","value":[{"datasetContactName_zh":{"typeName":"datasetContactName_zh","multiple":false,"typeClass":"primitive","value":"孔雷"},"datasetContactAffiliation_zh":{"typeName":"datasetContactAffiliation_zh","multiple":false,"typeClass":"primitive","value":"亚洲成人在线一二三四五六区生物信息学中心"},"datasetContactEmail_zh":{"typeName":"datasetContactEmail_zh","multiple":false,"typeClass":"primitive","value":"kongl@mail.cbi.cqjj8.com"}}]},{"typeName":"depositor_zh","multiple":false,"typeClass":"primitive","value":"亚洲成人在线一二三四五六区图书馆"},{"typeName":"dateOfDeposit_zh","multiple":false,"typeClass":"primitive","value":"2015-11-20"},{"typeName":"dsDescription_zh","multiple":true,"typeClass":"compound","value":[{"dsDescriptionValue_zh":{"typeName":"dsDescriptionValue_zh","multiple":false,"typeClass":"primitive","value":"<a href=\"http://tlife.fudan.edu.cn/cvtree/\">访问数据</a><br>\r\nCVTree constructs whole-genome based phylogenetic trees without sequence alignment by using a Composition Vector (CV) approach. It was first developed to infer evolutionary relatedness of microbial organisms and then successfully applied to viruses, chloroplasts, and fungi. It circumvents the ambiguity of choosing the genes for phylogenetic reconstruction and avoids the necessity of aligning sequences of essentially different length and gene content.\r\n\r\nThe new features of this CVTree update include:\r\n\r\n\tthe inbuilt database has been enlarged and is now updated monthly from the NCBI FTP site Sayers et al. (2009).\r\n\tUsers may upload sequences of their own and carry out phylogenetic study together with genomes selected from the inbuilt database.\r\n\tMany kinds of tree files are provided to facilitate comparison with taxonomy. Some tree files are directly uploadable to MEGA Tamura et al. (2007) or the Interactive Tree Of Life (iTOL) project Letunic and Bork (2007) in order to display the results in different ways.\r\n\tThe efficiency of CVTree has been significantly enhanced to meet the requirement of treating thousands of genomes in a single run.\r\n"}}]},{"typeName":"subject_zh","multiple":true,"typeClass":"controlledVocabulary","value":["医药、健康与生命科学"]},{"typeName":"keyword_zh","multiple":true,"typeClass":"compound","value":[{"keywordValue_zh":{"typeName":"keywordValue_zh","multiple":false,"typeClass":"primitive","value":"Composition Vector; phylogenetic study platform; whole genomes;"}}]},{"typeName":"notesText_zh","multiple":false,"typeClass":"primitive","value":"Please Cite:\r\nZhao Xu, Bailin Hao, \"CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes\", Nucleic Acids Res. 2009 37(Web Server issue): W174-W178.\r\n"}]},"citation":{"displayName":"Citation Metadata","fields":[{"typeName":"title","multiple":false,"typeClass":"primitive","value":"CVTree -- Composition Vector Tree constructs phylogeny trees"},{"typeName":"author","multiple":true,"typeClass":"compound","value":[{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Center for Bioinformatics"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Peking University"}}]},{"typeName":"datasetContact","multiple":true,"typeClass":"compound","value":[{"datasetContactName":{"typeName":"datasetContactName","multiple":false,"typeClass":"primitive","value":"Lei Kong"},"datasetContactAffiliation":{"typeName":"datasetContactAffiliation","multiple":false,"typeClass":"primitive","value":"Center for Bioinformatics , Peking University"},"datasetContactEmail":{"typeName":"datasetContactEmail","multiple":false,"typeClass":"primitive","value":"kongl@mail.cbi.cqjj8.com"}}]},{"typeName":"depositor","multiple":false,"typeClass":"primitive","value":"Peking University Library"},{"typeName":"dateOfDeposit","multiple":false,"typeClass":"primitive","value":"2015-11-20"},{"typeName":"dsDescription","multiple":true,"typeClass":"compound","value":[{"dsDescriptionValue":{"typeName":"dsDescriptionValue","multiple":false,"typeClass":"primitive","value":"<a href=\"http://tlife.fudan.edu.cn/cvtree/\">Access to Data</a><br>\r\nCVTree constructs whole-genome based phylogenetic trees without sequence alignment by using a Composition Vector (CV) approach. 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(2007) or the Interactive Tree Of Life (iTOL) project Letunic and Bork (2007) in order to display the results in different ways.\r\n\tThe efficiency of CVTree has been significantly enhanced to meet the requirement of treating thousands of genomes in a single run.\r\n"}}]},{"typeName":"subject","multiple":true,"typeClass":"controlledVocabulary","value":["Medicine, Health and Life Sciences"]},{"typeName":"keyword","multiple":true,"typeClass":"compound","value":[{"keywordValue":{"typeName":"keywordValue","multiple":false,"typeClass":"primitive","value":"Composition Vector; phylogenetic study platform; whole genomes;"}}]},{"typeName":"notesText","multiple":false,"typeClass":"primitive","value":"Please Cite:\r\nZhao Xu, Bailin Hao, \"CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes\", Nucleic Acids Res. 2009 37(Web Server issue): W174-W178.\r\n"}]}},"files":[],"citation":"Center for Bioinformatics, 2015, \"CVTree -- Composition Vector Tree constructs phylogeny trees\", http://doi.org/10.18170/DVN/XPECRU, Peking University Open Research Data Platform, V1"}}